Variant report

Variant	rs12571437
Chromosome Location	chr10:50475305-50475306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10732631	0.82[AMR][1000 genomes]
rs10735220	0.82[AMR][1000 genomes]
rs10735221	0.80[AMR][1000 genomes]
rs10745257	0.83[AMR][1000 genomes]
rs10776550	0.83[AMR][1000 genomes]
rs10776551	0.83[AMR][1000 genomes]
rs10857454	0.82[AMR][1000 genomes]
rs10857455	0.83[AMR][1000 genomes]
rs10857456	0.83[AMR][1000 genomes]
rs10857458	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10857460	0.82[AMR][1000 genomes]
rs11101073	0.90[AFR][1000 genomes]
rs11101075	0.82[AMR][1000 genomes]
rs11101076	0.82[AMR][1000 genomes]
rs12254955	0.82[AMR][1000 genomes]
rs2377975	0.82[AMR][1000 genomes]
rs2377977	0.83[AMR][1000 genomes]
rs2377978	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2377979	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3996894	0.82[AMR][1000 genomes]
rs3996895	0.82[AMR][1000 genomes]
rs4310533	0.82[AMR][1000 genomes]
rs4478905	0.82[AMR][1000 genomes]
rs4483512	0.82[AMR][1000 genomes]
rs4582889	0.83[AMR][1000 genomes]
rs4600130	0.80[AMR][1000 genomes]
rs4838376	0.80[AMR][1000 genomes]
rs4838377	0.82[AMR][1000 genomes]
rs4838479	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4838481	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4838482	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4838483	0.82[AMR][1000 genomes]
rs4838485	0.82[AMR][1000 genomes]
rs4838486	0.82[AMR][1000 genomes]
rs6537519	0.82[AMR][1000 genomes]
rs6537520	0.80[AMR][1000 genomes]
rs7082585	0.82[AMR][1000 genomes]
rs7098191	0.86[AMR][1000 genomes]
rs7901468	0.81[AMR][1000 genomes]
rs7905866	0.80[AMR][1000 genomes]
rs7911371	0.82[AMR][1000 genomes]
rs7911514	0.82[AMR][1000 genomes]
rs7913006	0.82[AMR][1000 genomes]
rs7913851	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50463000-50478800	Weak transcription	Right Atrium	heart
2	chr10:50470800-50480800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links