Variant report

Variant	rs12572211
Chromosome Location	chr10:91018149-91018150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12573541	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv895882	chr10:91002927-91021645	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv516481	chr10:91017363-91018520	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91011400-91021600	Weak transcription	Fetal Brain Male	brain
2	chr10:91011800-91020400	Weak transcription	Stomach Mucosa	stomach
3	chr10:91012000-91020400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:91012000-91021800	Weak transcription	Right Atrium	heart
5	chr10:91014400-91023400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:91015800-91019200	Enhancers	Brain Hippocampus Middle	brain
7	chr10:91016000-91020000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:91016000-91020400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:91016000-91020400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:91016400-91020200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:91016600-91020400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:91016600-91020400	Weak transcription	Adipose Nuclei	Adipose
13	chr10:91017000-91020200	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:91017200-91018200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:91017200-91018200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:91017200-91018400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr10:91017400-91020000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:91017800-91019800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:91017800-91020000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:91017800-91020000	Weak transcription	Brain Angular Gyrus	brain
21	chr10:91017800-91020000	Weak transcription	Brain Anterior Caudate	brain
22	chr10:91017800-91020000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:91017800-91020000	Weak transcription	Brain Substantia Nigra	brain
24	chr10:91017800-91020000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:91017800-91020000	Weak transcription	Fetal Lung	lung
26	chr10:91017800-91020400	Weak transcription	Ovary	ovary
27	chr10:91018000-91020400	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links