Variant report

Variant	rs12574541
Chromosome Location	chr11:10757491-10757492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10586333..10586873-chr11:10757080..10757729,2	K562	blood:
2	chr11:10645536..10647018-chr11:10756988..10757969,13	K562	blood:
3	chr11:10535677..10536233-chr11:10756804..10757688,2	MCF-7	breast:
4	chr11:10434756..10435452-chr11:10756898..10757941,4	MCF-7	breast:
5	chr11:10535492..10536882-chr11:10757031..10758034,5	K562	blood:
6	chr11:10228823..10229753-chr11:10757048..10757561,2	K562	blood:
7	chr11:10675716..10676486-chr11:10756936..10757598,2	K562	blood:
8	chr11:10645674..10646632-chr11:10756942..10757922,7	MCF-7	breast:
9	chr11:10756194..10759055-chr11:10771623..10774261,2	K562	blood:
10	chr11:10585636..10586718-chr11:10756889..10757976,5	MCF-7	breast:
11	chr11:10427758..10428669-chr11:10756932..10757785,3	MCF-7	breast:
12	chr11:10678917..10680760-chr11:10757378..10759987,2	K562	blood:
13	chr11:10675809..10676339-chr11:10757361..10757900,2	MCF-7	breast:
14	chr11:10427272..10428747-chr11:10756868..10757977,15	K562	blood:
15	chr11:10726070..10727726-chr11:10756782..10759046,2	K562	blood:
16	chr11:10756121..10759478-chr11:10761013..10764437,4	K562	blood:
17	chr11:10434718..10435292-chr11:10757181..10757746,2	MCF-7	breast:
18	chr11:10702876..10705073-chr11:10754687..10757563,2	K562	blood:
19	chr11:10562517..10563132-chr11:10757044..10757560,2	K562	blood:
20	chr11:10429637..10431690-chr11:10756328..10758513,2	MCF-7	breast:
21	chr11:10756589..10759055-chr11:10771202..10773123,2	K562	blood:
22	chr11:10755622..10759318-chr11:10762937..10767532,4	K562	blood:
23	chr11:10756270..10758622-chr11:10829204..10831091,2	K562	blood:
24	chr11:10645710..10647291-chr11:10756891..10757870,13	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000246308	Chromatin interaction
ENSG00000177112	Chromatin interaction
ENSG00000198730	Chromatin interaction
ENSG00000133805	Chromatin interaction
ENSG00000110315	Chromatin interaction
ENSG00000110321	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12574531	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1037639	chr11:10737790-10871809	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv38696	chr11:10757081-10762532	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10754200-10759600	Weak transcription	Right Atrium	heart
2	chr11:10755600-10757600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:10755600-10758000	Enhancers	Fetal Stomach	stomach
4	chr11:10756200-10757800	Weak transcription	Aorta	Aorta
5	chr11:10756200-10758200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:10756200-10758200	Enhancers	Esophagus	oesophagus
7	chr11:10756200-10758200	Enhancers	Ovary	ovary
8	chr11:10756400-10758000	Weak transcription	Lung	lung
9	chr11:10756600-10772000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:10756800-10758200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:10756800-10758200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr11:10757000-10757600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr11:10757000-10757600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:10757000-10757600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:10757000-10757600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:10757000-10757600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:10757000-10757600	Active TSS	Brain Angular Gyrus	brain
18	chr11:10757000-10757600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:10757000-10757600	Active TSS	HSMM	muscle
20	chr11:10757000-10757800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr11:10757000-10757800	Enhancers	Primary hematopoietic stem cells	blood
22	chr11:10757000-10757800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:10757000-10757800	Enhancers	Liver	Liver
24	chr11:10757000-10757800	Flanking Active TSS	Brain Anterior Caudate	brain
25	chr11:10757000-10757800	Enhancers	Brain Substantia Nigra	brain
26	chr11:10757000-10757800	Enhancers	Placenta	Placenta
27	chr11:10757000-10757800	Enhancers	GM12878-XiMat	blood
28	chr11:10757000-10758000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr11:10757000-10758000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr11:10757000-10758000	Flanking Active TSS	Colon Smooth Muscle	Colon
31	chr11:10757000-10758000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr11:10757000-10758000	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr11:10757000-10758200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:10757000-10758200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:10757000-10758200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:10757000-10758200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:10757000-10758200	Enhancers	Fetal Intestine Large	intestine
38	chr11:10757000-10758200	Enhancers	Placenta Amnion	Placenta Amnion
39	chr11:10757000-10758200	Flanking Active TSS	Hela-S3	cervix
40	chr11:10757000-10758200	Enhancers	HSMMtube	muscle
41	chr11:10757000-10758200	Flanking Active TSS	NHEK	skin
42	chr11:10757000-10758200	Flanking Active TSS	Osteobl	bone
43	chr11:10757200-10757600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
44	chr11:10757200-10757600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
45	chr11:10757200-10757600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr11:10757200-10757600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:10757200-10757600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr11:10757200-10757600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr11:10757200-10757600	Active TSS	Brain Cingulate Gyrus	brain
50	chr11:10757200-10757600	Flanking Active TSS	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links