Variant report

Variant	rs12577362
Chromosome Location	chr11:77289035-77289036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11237234	0.80[ASN][1000 genomes]
rs12417215	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12418261	0.91[ASN][1000 genomes]
rs12419186	0.93[ASN][1000 genomes]
rs12420021	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12421695	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12574660	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12575305	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12575763	0.93[ASN][1000 genomes]
rs12577552	0.86[ASN][1000 genomes]
rs1945751	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2156842	0.93[ASN][1000 genomes]
rs2187547	0.91[ASN][1000 genomes]
rs2276415	0.86[ASN][1000 genomes]
rs2276416	0.86[ASN][1000 genomes]
rs4301811	0.84[ASN][1000 genomes]
rs4399350	0.93[ASN][1000 genomes]
rs4486654	0.84[ASN][1000 genomes]
rs4553396	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4606503	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4944169	0.80[ASN][1000 genomes]
rs4944170	0.80[ASN][1000 genomes]
rs4944171	0.80[ASN][1000 genomes]
rs4945182	0.93[ASN][1000 genomes]
rs4945183	0.93[ASN][1000 genomes]
rs4945187	0.80[ASN][1000 genomes]
rs56175172	0.90[ASN][1000 genomes]
rs57588070	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57805854	0.80[ASN][1000 genomes]
rs58608947	0.80[ASN][1000 genomes]
rs58720932	0.80[ASN][1000 genomes]
rs59581090	0.86[ASN][1000 genomes]
rs59969402	0.80[ASN][1000 genomes]
rs59983642	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60045757	0.82[ASN][1000 genomes]
rs60132034	0.80[ASN][1000 genomes]
rs60842160	0.90[ASN][1000 genomes]
rs60849458	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61358482	0.80[ASN][1000 genomes]
rs6592736	0.86[ASN][1000 genomes]
rs66504136	0.80[ASN][1000 genomes]
rs67062156	0.93[ASN][1000 genomes]
rs67843465	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs68052959	0.91[ASN][1000 genomes]
rs7106659	0.80[ASN][1000 genomes]
rs7109398	0.80[ASN][1000 genomes]
rs7119934	0.90[ASN][1000 genomes]
rs713083	0.80[ASN][1000 genomes]
rs72943487	0.89[ASN][1000 genomes]
rs72943494	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72943497	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72945524	0.91[ASN][1000 genomes]
rs72945540	0.86[ASN][1000 genomes]
rs72945566	0.80[ASN][1000 genomes]
rs7930885	0.80[ASN][1000 genomes]
rs7930988	0.80[ASN][1000 genomes]
rs7932111	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7932603	0.87[ASN][1000 genomes]
rs7933197	0.93[ASN][1000 genomes]
rs7947430	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7950612	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3437433	chr11:77101280-77291686	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2752651	chr11:77211136-77318279	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1038974	chr11:77284036-77431228	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1041384	chr11:77284558-77419809	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs12577362	RP11-91P24.6	cis	Artery Tibial	GTEx
rs12577362	AAMDC	cis	Thyroid	GTEx
rs12577362	RP11-91P24.7	cis	Artery Tibial	GTEx
rs12577362	AAMDC	cis	Artery Tibial	GTEx
rs12577362	RSF1	Cis_1M	lymphoblastoid	RTeQTL
rs12577362	INTS4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77280800-77299600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:77285800-77294400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:77287800-77291600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:77287800-77299600	Weak transcription	Ovary	ovary

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