Variant report

Variant	rs12580133
Chromosome Location	chr12:104848130-104848131
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12578959	1.00[EUR][1000 genomes]
rs12581080	1.00[EUR][1000 genomes]
rs12581557	1.00[EUR][1000 genomes]
rs17035647	1.00[EUR][1000 genomes]
rs3751318	1.00[EUR][1000 genomes]
rs3812797	1.00[EUR][1000 genomes]
rs4964796	1.00[EUR][1000 genomes]
rs4964803	1.00[EUR][1000 genomes]
rs4964804	1.00[EUR][1000 genomes]
rs4964810	1.00[EUR][1000 genomes]
rs7136717	1.00[EUR][1000 genomes]
rs7300417	1.00[EUR][1000 genomes]
rs7301678	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832502	chr12:104833729-104908288	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3505907	chr12:104846342-104848322	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3505918	chr12:104846342-104848322	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104840000-104849800	Weak transcription	Aorta	Aorta
2	chr12:104844200-104848200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:104844400-104849400	Weak transcription	Spleen	Spleen
4	chr12:104846400-104849800	Weak transcription	Fetal Brain Male	brain
5	chr12:104846600-104849200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:104847400-104848600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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