Variant report

Variant	rs12581470
Chromosome Location	chr12:9464828-9464829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10743654	0.88[CEU][hapmap]
rs12579328	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs12580730	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2377757	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55809356	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67205533	0.81[AMR][1000 genomes]
rs7294479	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7316028	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs741623	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv1048491	chr12:9208806-9544655	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv523958	chr12:9303440-9549072	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv557355	chr12:9309995-9529015	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1035953	chr12:9314481-9544655	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
6	nsv427903	chr12:9371593-9830668	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
8	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
9	nsv916832	chr12:9397450-9693952	ZNF genes & repeats Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv976736	chr12:9431362-9524845	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv898740	chr12:9436446-9546962	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv1050161	chr12:9436635-9685768	Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	nsv975441	chr12:9439756-9469779	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv898741	chr12:9458525-9546962	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12581470	DDX12P	cis	Muscle Skeletal	GTEx
rs12581470	DDX12P	cis	Artery Tibial	GTEx
rs12581470	RP11-22B23.1	cis	Artery Tibial	GTEx

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9437200-9465600	Weak transcription	Ovary	ovary
2	chr12:9437200-9467600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr12:9437200-9472400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr12:9437200-9485200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:9437400-9467800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:9437400-9468000	Weak transcription	Pancreas	Pancrea
7	chr12:9437400-9470800	Weak transcription	Brain Germinal Matrix	brain
8	chr12:9443200-9467800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr12:9446200-9466000	Weak transcription	Fetal Brain Female	brain
10	chr12:9449000-9466000	Weak transcription	Gastric	stomach
11	chr12:9449400-9468000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr12:9450200-9471400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr12:9452400-9466600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr12:9453600-9465200	Weak transcription	Colonic Mucosa	Colon
15	chr12:9455200-9466000	Weak transcription	Fetal Intestine Large	intestine
16	chr12:9455200-9466000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr12:9455800-9466000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr12:9456200-9472200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr12:9456400-9465200	Weak transcription	HepG2	liver
20	chr12:9456400-9471800	Weak transcription	GM12878-XiMat	blood
21	chr12:9456800-9466400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:9457400-9485800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr12:9457600-9466600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr12:9458000-9466000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr12:9458000-9472200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr12:9458400-9467800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr12:9458400-9469400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr12:9459800-9465000	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr12:9460200-9467800	Weak transcription	Adipose Nuclei	Adipose
30	chr12:9460400-9465600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr12:9460400-9466000	Weak transcription	Fetal Lung	lung
32	chr12:9460400-9468400	Weak transcription	Brain Hippocampus Middle	brain
33	chr12:9461400-9465400	Weak transcription	HMEC	breast
34	chr12:9461800-9465600	Strong transcription	Dnd41	blood
35	chr12:9461800-9466000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr12:9461800-9466400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr12:9462200-9465600	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr12:9462400-9465800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr12:9462600-9465200	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr12:9462600-9465200	Strong transcription	H9 Cell Line	embryonic stem cell
41	chr12:9462600-9465400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr12:9462600-9465600	Strong transcription	Fetal Stomach	stomach
43	chr12:9462600-9466400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr12:9462800-9465200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr12:9462800-9465600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr12:9462800-9465600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr12:9462800-9466200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr12:9463000-9465400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr12:9463000-9465400	Strong transcription	Fetal Intestine Small	intestine
50	chr12:9463000-9466400	Strong transcription	Fetal Thymus	thymus

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