Variant report

Variant	rs12581753
Chromosome Location	chr12:105113447-105113448
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1164751	1.00[ASW][hapmap]
rs12820999	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1050695	chr12:105000981-105125161	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv541589	chr12:105000981-105125161	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105080400-105131800	Weak transcription	NHEK	skin
2	chr12:105094200-105113600	Weak transcription	GM12878-XiMat	blood
3	chr12:105098400-105115800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:105098400-105116200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:105103000-105114200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:105104200-105113600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:105104800-105116200	Weak transcription	A549	lung
8	chr12:105105200-105113800	Weak transcription	HSMM	muscle
9	chr12:105105800-105114000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr12:105106600-105120600	Weak transcription	Pancreas	Pancrea
11	chr12:105107000-105113800	Weak transcription	NHDF-Ad	bronchial
12	chr12:105107200-105114200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:105107200-105115000	Weak transcription	K562	blood
14	chr12:105107600-105114600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr12:105108000-105114400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr12:105108200-105113600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr12:105108800-105117600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr12:105109600-105113600	Weak transcription	Brain Angular Gyrus	brain
19	chr12:105109600-105116000	Weak transcription	Fetal Intestine Large	intestine
20	chr12:105109800-105114000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr12:105109800-105116000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr12:105109800-105116200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr12:105110000-105114000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr12:105110400-105113600	Weak transcription	Primary T cells from cord blood	blood
25	chr12:105110600-105121000	Weak transcription	Gastric	stomach
26	chr12:105111200-105117600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr12:105111800-105114000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr12:105111800-105114000	Enhancers	Fetal Stomach	stomach
29	chr12:105111800-105114400	Enhancers	Fetal Brain Female	brain
30	chr12:105112000-105113600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr12:105112000-105113600	Enhancers	Thymus	Thymus
32	chr12:105112000-105114000	Enhancers	Fetal Lung	lung
33	chr12:105112000-105114000	Enhancers	Fetal Muscle Leg	muscle
34	chr12:105112000-105114200	Enhancers	Fetal Thymus	thymus
35	chr12:105112000-105115400	Enhancers	Fetal Brain Male	brain
36	chr12:105112000-105115400	Enhancers	Lung	lung
37	chr12:105112200-105113600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr12:105112200-105113600	Enhancers	Brain Substantia Nigra	brain
39	chr12:105112200-105113800	Enhancers	Brain Germinal Matrix	brain
40	chr12:105112400-105113600	Enhancers	Brain Cingulate Gyrus	brain
41	chr12:105112400-105113600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr12:105112400-105113600	Weak transcription	Left Ventricle	heart
43	chr12:105112400-105113800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr12:105112400-105113800	Enhancers	Right Atrium	heart
45	chr12:105112400-105113800	Enhancers	NHLF	lung
46	chr12:105112400-105114000	Enhancers	Primary T cells fromperipheralblood	blood
47	chr12:105112400-105114800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr12:105112600-105113600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr12:105112600-105113800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr12:105112600-105113800	Enhancers	Duodenum Smooth Muscle	Duodenum

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