Variant report

Variant	rs12581860
Chromosome Location	chr12:9124190-9124191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1049925	0.82[AMR][1000 genomes]
rs10842660	0.81[AMR][1000 genomes]
rs11048190	0.87[AMR][1000 genomes]
rs11048195	0.83[AMR][1000 genomes]
rs11048264	0.82[AMR][1000 genomes]
rs11048337	0.81[AMR][1000 genomes]
rs11048338	0.87[AMR][1000 genomes]
rs11048344	0.89[AMR][1000 genomes]
rs11048345	0.89[AMR][1000 genomes]
rs11494569	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11494570	0.81[AMR][1000 genomes]
rs12371786	0.86[AMR][1000 genomes]
rs12422905	0.82[AMR][1000 genomes]
rs12423746	0.87[AMR][1000 genomes]
rs12423817	0.83[AMR][1000 genomes]
rs12424026	0.87[AMR][1000 genomes]
rs12812913	0.83[AMR][1000 genomes]
rs12821842	0.83[AMR][1000 genomes]
rs12823100	0.87[AMR][1000 genomes]
rs12824140	0.80[AMR][1000 genomes]
rs12827055	0.84[AMR][1000 genomes]
rs12827988	0.84[AMR][1000 genomes]
rs12828902	0.80[AMR][1000 genomes]
rs12833375	0.82[AMR][1000 genomes]
rs1476911	0.86[AMR][1000 genomes]
rs1805724	0.83[AMR][1000 genomes]
rs1805732	0.86[AMR][1000 genomes]
rs1805733	0.83[AMR][1000 genomes]
rs1805736	0.80[AMR][1000 genomes]
rs1805761	0.84[AMR][1000 genomes]
rs1805765	0.89[AMR][1000 genomes]
rs2041624	0.87[AMR][1000 genomes]
rs2041625	0.82[AMR][1000 genomes]
rs2080116	0.81[AMR][1000 genomes]
rs2110190	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2110192	0.80[AMR][1000 genomes]
rs2377672	0.89[AMR][1000 genomes]
rs2377673	0.83[AMR][1000 genomes]
rs2377674	0.82[AMR][1000 genomes]
rs34285491	0.83[AMR][1000 genomes]
rs34798934	0.87[AMR][1000 genomes]
rs35870866	0.80[AMR][1000 genomes]
rs4254119	0.82[AMR][1000 genomes]
rs4309200	0.87[AMR][1000 genomes]
rs7300767	0.87[AMR][1000 genomes]
rs7301381	0.82[AMR][1000 genomes]
rs7302417	0.82[AMR][1000 genomes]
rs7309922	0.82[AMR][1000 genomes]
rs7314942	0.80[AMR][1000 genomes]
rs7315055	0.80[AMR][1000 genomes]
rs7957321	0.85[AMR][1000 genomes]
rs933462	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832327	chr12:9081779-9246220	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv819596	chr12:9113514-9141537	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12581860	KLRG1	cis	Adipose Subcutaneous	GTEx
rs12581860	M6PR	cis	brain	BrainEAC
rs12581860	M6PR	cis	cerebellar cortex	BrainEAC

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9121400-9132600	Weak transcription	Psoas Muscle	Psoas
2	chr12:9122000-9133000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:9122800-9128200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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