Variant report

Variant	rs12581935
Chromosome Location	chr12:67847365-67847366
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12579690	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17836797	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56888036	0.93[ASN][1000 genomes]
rs59765291	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67835600-67849000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:67843400-67847400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr12:67843600-67847600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:67843800-67849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr12:67844000-67849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr12:67844600-67847800	ZNF genes & repeats	GM12878-XiMat	blood
7	chr12:67844600-67851600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:67845400-67850400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr12:67845800-67850400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr12:67846000-67850200	Weak transcription	Liver	Liver
11	chr12:67847000-67849000	Weak transcription	Fetal Heart	heart
12	chr12:67847200-67849000	Weak transcription	Left Ventricle	heart
13	chr12:67847200-67851400	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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