Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11183605	0.82[JPT][hapmap]
rs11831929	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs11836940	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12300125	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs12316767	0.82[JPT][hapmap]
rs12578813	0.84[AMR][1000 genomes]
rs12579089	0.84[AMR][1000 genomes]
rs12580356	0.84[AMR][1000 genomes]
rs12580488	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12581205	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12581366	0.84[AMR][1000 genomes]
rs12582013	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12582034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12582056	1.00[CEU][hapmap]
rs12582476	0.84[AMR][1000 genomes]
rs17097022	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17594275	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17611638	0.84[AMR][1000 genomes]
rs2042058	1.00[CEU][hapmap]
rs2287471	0.82[JPT][hapmap]
rs235607	1.00[CEU][hapmap]
rs235617	1.00[CEU][hapmap]
rs235621	1.00[CEU][hapmap];0.83[TSI][hapmap]
rs235622	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs235626	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs2430946	1.00[CEU][hapmap]
rs2430947	1.00[CEU][hapmap]
rs2471618	1.00[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs4768741	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs4768744	1.00[CEU][hapmap]
rs60049938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs766794	0.84[AMR][1000 genomes]
rs977069	1.00[CEU][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049525	chr12:46721742-47264172	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
2	nsv541486	chr12:46721742-47264172	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
3	esv3416674	chr12:46988689-47178369	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47149600-47165400	Weak transcription	Pancreas	Pancrea
2	chr12:47156400-47159600	Weak transcription	HSMM	muscle
3	chr12:47157400-47159400	Weak transcription	Liver	Liver
4	chr12:47157400-47172800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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