Variant report

Variant	rs12582658
Chromosome Location	chr12:40350842-40350843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10784284	0.96[ASN][1000 genomes]
rs11174482	1.00[YRI][hapmap]
rs12581013	0.85[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1353593	0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17127277	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs1908911	0.86[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768199	0.96[ASN][1000 genomes]
rs56717977	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57095253	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61050676	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72644818	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7967427	0.86[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7969011	0.85[JPT][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs7972838	0.85[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7978427	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40338000-40366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:40347800-40369800	Weak transcription	Pancreas	Pancrea
3	chr12:40348200-40361400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:40349800-40351000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr12:40350000-40351000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:40350600-40351800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:40350800-40351000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr12:40350800-40351200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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