Variant report

Variant	rs12582786
Chromosome Location	chr12:104931201-104931202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:104931194..104933511-chr12:104936076..104938027,2	MCF-7	breast:
2	chr12:104899181..104901734-chr12:104930308..104932411,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11112103	1.00[EUR][1000 genomes]
rs12580732	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12581154	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12581196	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12581471	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12581482	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12581832	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12582770	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35340768	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4964817	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58027342	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58754129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60941296	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7300706	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7980620	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832504	chr12:104853331-105028245	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104915600-104936600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:104918000-104934200	Weak transcription	A549	lung
3	chr12:104919200-104935000	Weak transcription	Primary T cells from cord blood	blood
4	chr12:104921400-104931600	Weak transcription	Gastric	stomach
5	chr12:104921400-104939000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:104924800-104939600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr12:104925600-104931400	Enhancers	Primary B cells from peripheral blood	blood
8	chr12:104927200-104943000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr12:104928400-104932000	Weak transcription	K562	blood
10	chr12:104928600-104931600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr12:104928600-104932000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr12:104928600-104934200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr12:104928600-104935400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr12:104928600-104939000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr12:104929000-104931400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:104929200-104934200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr12:104929200-104934200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr12:104929200-104934200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr12:104929200-104934400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr12:104929200-104934400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr12:104929200-104934600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr12:104929200-104939000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr12:104929200-104939000	Weak transcription	Lung	lung
24	chr12:104929200-104940400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr12:104929200-104942800	Weak transcription	Pancreas	Pancrea
26	chr12:104929400-104933600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr12:104929400-104934200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr12:104929400-104934200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:104929400-104934200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr12:104929400-104934200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr12:104929400-104934200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr12:104929400-104934200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr12:104929400-104935400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr12:104929600-104934200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr12:104929600-104934400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr12:104930000-104932200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr12:104930200-104932600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr12:104930200-104934400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr12:104930200-104957600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr12:104930400-104934000	Weak transcription	Esophagus	oesophagus
41	chr12:104930400-104934200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr12:104930400-104934200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr12:104930600-104932200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr12:104930600-104939000	Weak transcription	Spleen	Spleen
45	chr12:104930600-104939200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr12:104930800-104931600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr12:104930800-104932800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr12:104930800-104940800	Weak transcription	Colon Smooth Muscle	Colon
49	chr12:104930800-104943800	Weak transcription	Small Intestine	intestine
50	chr12:104931000-104932200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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