Variant report

Variant	rs12583807
Chromosome Location	chr13:39255068-39255069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs34114146	1.00[AFR][1000 genomes]
rs7329184	0.82[AMR][1000 genomes]
rs9576609	0.82[AMR][1000 genomes]
rs9576610	0.82[AMR][1000 genomes]
rs9603414	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39253000-39256000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:39253200-39259000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:39254000-39255800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:39254200-39256200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr13:39254400-39259000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:39254400-39259600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:39254400-39259600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr13:39254400-39259600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:39254800-39255200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:39254800-39255200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr13:39255000-39255200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr13:39255000-39255400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:39255000-39255800	Enhancers	Adipose Nuclei	Adipose
14	chr13:39255000-39256000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr13:39255000-39256400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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