Variant report

Variant	rs12584980
Chromosome Location	chr13:49239139-49239140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12584114	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584341	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584714	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12857866	1.00[CHB][hapmap]
rs1326698	1.00[ASN][1000 genomes]
rs1575921	1.00[ASN][1000 genomes]
rs17071937	1.00[CHB][hapmap]
rs1926597	1.00[CHB][hapmap]
rs2148515	1.00[CHB][hapmap]
rs3890505	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41431749	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41487046	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4151613	1.00[CHB][hapmap]
rs4334183	1.00[ASN][1000 genomes]
rs449268	1.00[CHB][hapmap]
rs7139763	1.00[CHB][hapmap]
rs7326934	1.00[CHB][hapmap]
rs7338898	1.00[ASN][1000 genomes]
rs9316386	1.00[CHB][hapmap]
rs9316387	1.00[CHB][hapmap]
rs9316396	1.00[CHB][hapmap]
rs9331984	1.00[CHB][hapmap]
rs9331994	1.00[CHB][hapmap]
rs9332033	1.00[CHB][hapmap]
rs9332044	1.00[CHB][hapmap]
rs9332055	1.00[CHB][hapmap]
rs9332070	1.00[CHB][hapmap]
rs9595914	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv832605	chr13:49171305-49344970	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49229800-49239400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr13:49236600-49241600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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