Variant report

Variant	rs12585268
Chromosome Location	chr13:110653425-110653426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:110624570..110627835-chr13:110649740..110653862,3	MCF-7	breast:
2	chr13:110653031..110654741-chr17:73849649..73852204,2	MCF-7	breast:
3	chr13:110651856..110654487-chr13:110670006..110672793,2	MCF-7	breast:
4	chr13:110436934..110441220-chr13:110649910..110655074,7	MCF-7	breast:
5	chr13:110651700..110653449-chr13:110664832..110667633,2	K562	blood:
6	chr13:110652695..110654691-chr13:110658148..110659831,2	MCF-7	breast:
7	chr13:110651354..110653633-chr13:110756277..110757904,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000132471	Chromatin interaction
ENSG00000185950	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12583705	0.98[ASN][1000 genomes]
rs57376479	1.00[AFR][1000 genomes]
rs58684600	1.00[ASN][1000 genomes]
rs9588062	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110649800-110654800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr13:110649800-110655000	Enhancers	Hela-S3	cervix
3	chr13:110650400-110655000	Enhancers	HMEC	breast
4	chr13:110650800-110655400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:110651000-110654400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:110651000-110654800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:110651400-110653600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:110651400-110653600	Enhancers	Placenta	Placenta
9	chr13:110651400-110654000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr13:110651400-110655000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:110651600-110658000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr13:110651800-110654600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:110651800-110662800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr13:110652000-110654000	Enhancers	A549	lung
15	chr13:110652000-110654200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr13:110652400-110654800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr13:110652600-110658000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr13:110653000-110654600	Enhancers	NHEK	skin
19	chr13:110653000-110654800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr13:110653000-110654800	Enhancers	Osteobl	bone
21	chr13:110653000-110655400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr13:110653200-110654400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:110653200-110654600	Enhancers	NH-A	brain
24	chr13:110653200-110654600	Enhancers	NHDF-Ad	bronchial
25	chr13:110653200-110654600	Enhancers	NHLF	lung
26	chr13:110653400-110654400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr13:110653400-110654800	Enhancers	HSMM	muscle

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