Variant report

Variant	rs12585468
Chromosome Location	chr13:94066532-94066533
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7999539	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1048843	chr13:94064931-94103524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94058600-94077600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94063600-94066600	Weak transcription	Aorta	Aorta
3	chr13:94066200-94066600	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr13:94066200-94067000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:94066200-94067000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:94066200-94067000	Enhancers	Liver	Liver
7	chr13:94066200-94067400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:94066200-94067400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr13:94066200-94067400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr13:94066200-94067600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr13:94066200-94067800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr13:94066400-94066600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr13:94066400-94066600	Active TSS	Brain Anterior Caudate	brain
14	chr13:94066400-94066600	Flanking Active TSS	Osteobl	bone
15	chr13:94066400-94066800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr13:94066400-94066800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:94066400-94067000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr13:94066400-94067000	Flanking Active TSS	NH-A	brain
19	chr13:94066400-94067200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr13:94066400-94067400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr13:94066400-94067400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr13:94066400-94067400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr13:94066400-94067400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr13:94066400-94067400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:94066400-94067600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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