Variant report

Variant	rs12585515
Chromosome Location	chr13:39303796-39303797
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2197888	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2442362	0.99[EUR][1000 genomes]
rs2442363	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2442364	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2496435	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2496438	0.99[EUR][1000 genomes]
rs2496439	0.99[EUR][1000 genomes]
rs2496440	0.99[EUR][1000 genomes]
rs2496441	0.99[EUR][1000 genomes]
rs2496442	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2496443	0.99[EUR][1000 genomes]
rs2496444	0.99[EUR][1000 genomes]
rs2496452	1.00[EUR][1000 genomes]
rs28502478	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9603413	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs991093	0.99[EUR][1000 genomes]
rs991094	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39294800-39325000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:39298200-39339600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr13:39301000-39305400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:39303200-39308000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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