Variant report

Variant	rs12586013
Chromosome Location	chr13:48262201-48262202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10507559	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12586040	0.92[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2181955	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6561399	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6561400	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73185663	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73185667	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7335595	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7335859	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7982622	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7993140	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7997978	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9526380	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9526395	0.81[CEU][hapmap]
rs9534732	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9534745	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9534750	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9534752	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832600	chr13:48183118-48341417	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900066	chr13:48234112-48292845	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv561589	chr13:48251736-48420218	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48261800-48262600	Enhancers	Fetal Brain Male	brain
2	chr13:48262000-48263000	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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