Variant report

Variant	rs12586884
Chromosome Location	chr14:78041522-78041523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78033681..78035724-chr14:78039789..78042606,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10135955	0.98[ASN][1000 genomes]
rs11159281	0.97[ASN][1000 genomes]
rs11623225	0.98[ASN][1000 genomes]
rs12588462	0.91[ASN][1000 genomes]
rs1997561	0.98[ASN][1000 genomes]
rs61990793	1.00[ASN][1000 genomes]
rs7145619	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8010191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1053810	chr14:77987871-78148320	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1051554	chr14:78004196-78122980	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1794863	chr14:78024926-78048715	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77970200-78047200	Weak transcription	Fetal Heart	heart
2	chr14:77978800-78042200	Weak transcription	Fetal Brain Male	brain
3	chr14:77987800-78060000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:78009800-78050800	Weak transcription	Psoas Muscle	Psoas
5	chr14:78011200-78045800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:78013200-78066200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr14:78016400-78061000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:78018600-78044200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:78018800-78041600	Weak transcription	A549	lung
10	chr14:78018800-78047000	Weak transcription	Placenta	Placenta
11	chr14:78021600-78047000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr14:78021800-78061000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:78021800-78068400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr14:78021800-78071600	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:78022000-78060800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr14:78022200-78041800	Weak transcription	Gastric	stomach
17	chr14:78022400-78047200	Weak transcription	Brain Germinal Matrix	brain
18	chr14:78022400-78049000	Weak transcription	Right Ventricle	heart
19	chr14:78022400-78055000	Weak transcription	Colonic Mucosa	Colon
20	chr14:78022600-78041800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr14:78024000-78046400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr14:78024200-78041800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr14:78024200-78046800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr14:78024200-78047200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr14:78024400-78041600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr14:78026200-78045600	Weak transcription	Fetal Lung	lung
27	chr14:78028000-78041800	Weak transcription	Esophagus	oesophagus
28	chr14:78028400-78041800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:78028600-78047200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr14:78029800-78041800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr14:78029800-78041800	Weak transcription	HSMMtube	muscle
32	chr14:78029800-78041800	Weak transcription	NHLF	lung
33	chr14:78029800-78047600	Weak transcription	K562	blood
34	chr14:78030000-78041800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr14:78030000-78041800	Weak transcription	Left Ventricle	heart
36	chr14:78030200-78056800	Weak transcription	HMEC	breast
37	chr14:78033600-78044600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr14:78034800-78046000	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr14:78036000-78042200	Weak transcription	Fetal Kidney	kidney
40	chr14:78036000-78042200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr14:78036000-78046800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr14:78036200-78044000	Strong transcription	Primary hematopoietic stem cells	blood
43	chr14:78037000-78041800	Weak transcription	Liver	Liver
44	chr14:78037000-78042000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr14:78037200-78041600	Weak transcription	HUVEC	blood vessel
46	chr14:78037200-78041800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr14:78037400-78042000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr14:78037600-78049000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr14:78038200-78043200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:78038200-78044400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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