Variant report

Variant	rs12587525
Chromosome Location	chr14:77954219-77954220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10133896	0.81[CEU][hapmap]
rs11159264	0.81[CEU][hapmap]
rs11159268	0.92[YRI][hapmap]
rs11624990	0.81[CEU][hapmap]
rs11844594	0.81[CEU][hapmap]
rs12432247	0.82[CEU][hapmap]
rs12435136	0.81[CEU][hapmap]
rs12887556	0.85[YRI][hapmap]
rs176767	0.82[CEU][hapmap]
rs2193595	0.81[CEU][hapmap]
rs4575469	0.81[CEU][hapmap]
rs4899652	0.82[CEU][hapmap]
rs4903576	0.81[CEU][hapmap]
rs4903579	0.82[CEU][hapmap]
rs4903580	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12587525	SPTLC2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77947200-77956200	Strong transcription	HepG2	liver
2	chr14:77949400-77955600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:77950400-77957000	Weak transcription	Fetal Kidney	kidney
4	chr14:77951600-77957000	Weak transcription	Placenta	Placenta
5	chr14:77952000-77955600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:77952400-77957000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:77953400-77964200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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