Variant report

Variant	rs1258772
Chromosome Location	chr15:33115608-33115609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1258766	0.92[ASN][1000 genomes]
rs1258767	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1258769	0.92[ASN][1000 genomes]
rs1258770	0.92[ASN][1000 genomes]
rs1258771	0.92[ASN][1000 genomes]
rs1258790	0.93[ASN][1000 genomes]
rs1258792	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1258793	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1258794	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1258796	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv832961	chr15:33021177-33134988	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv903977	chr15:33040782-33117302	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv832962	chr15:33111517-33239736	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33061200-33141000	Weak transcription	Placenta	Placenta
2	chr15:33096200-33154000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:33096400-33116200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:33096400-33159000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:33103800-33139200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:33111200-33130000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:33111400-33116000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:33111600-33116200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:33111600-33118400	Weak transcription	Gastric	stomach
10	chr15:33111800-33116000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:33111800-33116000	Weak transcription	HSMMtube	muscle
12	chr15:33111800-33116400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:33111800-33116400	Weak transcription	NHEK	skin
14	chr15:33111800-33116600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:33112000-33116000	Weak transcription	NHLF	lung
16	chr15:33112000-33116600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:33112000-33126800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr15:33112000-33130600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:33112200-33116000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:33112200-33116000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:33112200-33116400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:33112400-33115800	Weak transcription	HSMM	muscle
23	chr15:33112400-33116600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:33112600-33116000	Weak transcription	NH-A	brain
25	chr15:33113200-33115800	Weak transcription	NHDF-Ad	bronchial
26	chr15:33113600-33116000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr15:33114200-33115800	Weak transcription	HUVEC	blood vessel
28	chr15:33115000-33115800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:33115000-33116000	Enhancers	A549	lung
30	chr15:33115200-33116400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:33115400-33115800	Weak transcription	Pancreas	Pancrea
32	chr15:33115600-33115800	Strong transcription	Osteobl	bone

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