Variant report

Variant	rs1258779
Chromosome Location	chr15:33136109-33136110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:33136051..33136687-chr15:33424687..33425559,2	K562	blood:
2	chr15:33111785..33114105-chr15:33134762..33137156,2	K562	blood:
3	chr15:33136011..33136698-chr15:33286980..33287655,2	K562	blood:
4	chr15:33131473..33134242-chr15:33135502..33137920,3	K562	blood:
5	chr15:33136039..33136889-chr15:33228248..33228998,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1258768	0.80[YRI][hapmap]
rs1258774	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1258786	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs3110556	0.91[AMR][1000 genomes]
rs74011867	1.00[AMR][1000 genomes]
rs74011870	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv832962	chr15:33111517-33239736	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33061200-33141000	Weak transcription	Placenta	Placenta
2	chr15:33096200-33154000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:33096400-33159000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:33103800-33139200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:33118600-33159000	Weak transcription	Gastric	stomach
6	chr15:33127000-33141400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr15:33130000-33136200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:33130800-33142000	Weak transcription	Spleen	Spleen
9	chr15:33131200-33153800	Weak transcription	Fetal Kidney	kidney
10	chr15:33131400-33139400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:33131800-33164800	Weak transcription	Pancreas	Pancrea
12	chr15:33132000-33148600	Weak transcription	Stomach Mucosa	stomach
13	chr15:33132400-33154000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:33132800-33154000	Weak transcription	Brain Angular Gyrus	brain
15	chr15:33133000-33142200	Weak transcription	HSMMtube	muscle
16	chr15:33133000-33148200	Weak transcription	Esophagus	oesophagus
17	chr15:33133000-33150400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:33133200-33139200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:33133400-33142200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:33133400-33143400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:33133600-33136200	Weak transcription	NH-A	brain
22	chr15:33133600-33137000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:33134000-33139200	Weak transcription	HSMM	muscle
24	chr15:33134600-33136400	Enhancers	NHDF-Ad	bronchial
25	chr15:33135400-33136200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:33135400-33136400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr15:33135600-33136200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr15:33135600-33136400	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr15:33135600-33136400	Enhancers	NHLF	lung
30	chr15:33135600-33136600	Enhancers	Osteobl	bone
31	chr15:33135800-33136400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr15:33135800-33136400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:33135800-33136400	Enhancers	A549	lung
34	chr15:33135800-33136600	Enhancers	Primary B cells from peripheral blood	blood
35	chr15:33135800-33137000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:33135800-33137000	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr15:33135800-33148200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr15:33136000-33137000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:33136000-33137000	Weak transcription	Brain Germinal Matrix	brain

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