Variant report

Variant	rs12587946
Chromosome Location	chr14:84390158-84390159
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10148908	0.91[ASN][1000 genomes]
rs11159614	0.92[ASN][1000 genomes]
rs11159623	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11159624	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12437313	0.89[AMR][1000 genomes]
rs12587963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588549	0.89[AMR][1000 genomes]
rs12590059	0.89[AMR][1000 genomes]
rs1511315	0.93[AMR][1000 genomes]
rs1698247	0.91[ASN][1000 genomes]
rs1698250	0.92[ASN][1000 genomes]
rs1705652	0.91[ASN][1000 genomes]
rs1705660	0.92[ASN][1000 genomes]
rs17119257	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4899844	0.99[ASN][1000 genomes]
rs4904146	0.89[AMR][1000 genomes]
rs4904148	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902159	chr14:84336944-84447356	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1037238	chr14:84376916-84407921	Enhancers Weak transcription Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv528927	chr14:84378369-84390391	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84390000-84390400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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