Variant report

Variant	rs12588973
Chromosome Location	chr14:65275053-65275054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65272312..65275235-chr14:65380241..65382678,2	K562	blood:

Variant related genes	Relation type
ENSG00000125954	Chromatin interaction
ENSG00000258289	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10129595	0.82[ASN][1000 genomes]
rs10132778	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs10137840	0.91[ASN][1000 genomes]
rs11158560	1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs17102113	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17102119	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17102145	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28441086	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4902316	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7149843	1.00[ASN][1000 genomes]
rs7342528	1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs8022355	0.95[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65254000-65282600	Weak transcription	Spleen	Spleen
2	chr14:65262000-65289800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:65268400-65290200	Weak transcription	Brain Germinal Matrix	brain
4	chr14:65271400-65289800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:65272400-65275800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr14:65272600-65275800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr14:65273000-65279200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:65273200-65279000	Weak transcription	Pancreas	Pancrea
9	chr14:65273400-65277200	Weak transcription	Aorta	Aorta
10	chr14:65273400-65279000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:65273800-65275200	Enhancers	Fetal Muscle Leg	muscle
12	chr14:65273800-65279000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr14:65273800-65287200	Weak transcription	K562	blood
14	chr14:65274000-65278200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr14:65274200-65275800	Enhancers	Psoas Muscle	Psoas
16	chr14:65274200-65278800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:65274400-65278400	Weak transcription	NHEK	skin
18	chr14:65274600-65276400	Weak transcription	Hela-S3	cervix
19	chr14:65274600-65278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:65274600-65278400	Weak transcription	HMEC	breast
21	chr14:65274600-65279000	Weak transcription	Fetal Thymus	thymus
22	chr14:65274600-65284600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:65274800-65278200	Weak transcription	A549	lung
24	chr14:65274800-65278800	Weak transcription	Left Ventricle	heart
25	chr14:65274800-65279000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:65274800-65279000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:65274800-65279000	Weak transcription	Lung	lung
28	chr14:65274800-65279000	Weak transcription	Right Atrium	heart
29	chr14:65274800-65279200	Weak transcription	Fetal Heart	heart
30	chr14:65275000-65281800	Weak transcription	Right Ventricle	heart

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