Variant report

Variant	rs12589781
Chromosome Location	chr14:103828257-103828258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:103809313..103813484-chr14:103825579..103830038,5	K562	blood:
2	chr14:103799180..103801732-chr14:103827433..103831794,4	MCF-7	breast:
3	chr14:103827117..103828725-chr14:103849989..103851539,2	K562	blood:
4	chr14:103828213..103830323-chr14:103850141..103852816,2	MCF-7	breast:
5	chr14:103798482..103804625-chr14:103825700..103830571,9	K562	blood:
6	chr14:103811389..103816050-chr14:103825804..103828416,6	MCF-7	breast:
7	chr14:103826315..103828477-chr14:103841833..103843424,2	MCF-7	breast:
8	chr14:103819883..103822629-chr14:103827073..103828660,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100664	Chromatin interaction
ENSG00000075413	Chromatin interaction
ENSG00000272533	Chromatin interaction
ENSG00000259775	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2296485	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042714	chr14:103085298-103860730	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	nsv1049747	chr14:103126148-103955984	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
3	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
4	nsv9168	chr14:103531729-103913306	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103826200-103828400	Enhancers	K562	blood
2	chr14:103826400-103828600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:103827000-103828400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:103827000-103829400	Enhancers	Hela-S3	cervix
5	chr14:103827400-103828600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:103827600-103828800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr14:103827600-103828800	Enhancers	HMEC	breast
8	chr14:103827600-103829200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:103827600-103829200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr14:103827600-103829200	Enhancers	NHEK	skin
11	chr14:103827800-103828400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:103827800-103828600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr14:103827800-103828800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:103827800-103828800	Enhancers	HepG2	liver
15	chr14:103827800-103828800	Enhancers	HUVEC	blood vessel
16	chr14:103827800-103828800	Enhancers	NH-A	brain
17	chr14:103827800-103828800	Enhancers	NHDF-Ad	bronchial
18	chr14:103827800-103828800	Enhancers	Osteobl	bone
19	chr14:103828000-103828400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:103828000-103828400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:103828200-103828400	Enhancers	H9 Cell Line	embryonic stem cell
22	chr14:103828200-103828600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:103828200-103828600	ZNF genes & repeats	Dnd41	blood
24	chr14:103828200-103829200	ZNF genes & repeats	A549	lung

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