Variant report

Variant	rs1260246
Chromosome Location	chr1:149848885-149848886
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000183558	Chromatin interaction
ENSG00000220323	Chromatin interaction
ENSG00000203812	Chromatin interaction
ENSG00000261716	Chromatin interaction
ENSG00000203819	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11205037	1.00[ASN][1000 genomes]
rs41265172	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55909843	1.00[ASN][1000 genomes]
rs59420759	1.00[ASN][1000 genomes]
rs610976	0.90[AFR][1000 genomes]
rs67567469	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72708144	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531664	1.00[ASN][1000 genomes]
rs7553723	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432820	chr1:148921404-149920927	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	784 gene(s)	inside rSNPs	diseases
2	esv1806395	chr1:149015282-149849940	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	425 gene(s)	inside rSNPs	diseases
3	esv1831586	chr1:149036382-149849940	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	425 gene(s)	inside rSNPs	diseases
4	nsv831525	chr1:149701537-149878033	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
5	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149846400-149853400	Weak transcription	Fetal Intestine Small	intestine
2	chr1:149846400-149855200	Weak transcription	Fetal Stomach	stomach
3	chr1:149846600-149854400	Weak transcription	Primary B cells from cord blood	blood
4	chr1:149847200-149849000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:149847800-149853400	Weak transcription	Fetal Intestine Large	intestine
6	chr1:149848400-149849600	Enhancers	Psoas Muscle	Psoas
7	chr1:149848800-149849400	Enhancers	K562	blood
8	chr1:149848800-149849600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr1:149848800-149849800	Enhancers	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links