Variant report

Variant	rs12606140
Chromosome Location	chr18:39099218-39099219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11082237	0.93[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12232647	0.81[EUR][1000 genomes]
rs12455982	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12456335	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12605092	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12606897	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12607575	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12607607	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17710973	0.85[EUR][1000 genomes]
rs17712291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1942078	0.92[ASN][1000 genomes]
rs2587634	0.92[ASN][1000 genomes]
rs2612342	0.92[ASN][1000 genomes]
rs2612343	0.92[ASN][1000 genomes]
rs2612344	0.92[ASN][1000 genomes]
rs2703176	0.92[ASN][1000 genomes]
rs2703183	0.92[ASN][1000 genomes]
rs2848760	0.92[ASN][1000 genomes]
rs2848761	0.92[ASN][1000 genomes]
rs2848762	0.92[ASN][1000 genomes]
rs2848767	0.92[ASN][1000 genomes]
rs2848768	0.92[ASN][1000 genomes]
rs66493714	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66521952	0.85[EUR][1000 genomes]
rs67761424	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7239339	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72900043	0.81[EUR][1000 genomes]
rs72900047	0.81[EUR][1000 genomes]
rs72900102	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39090400-39101400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:39090400-39108400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr18:39092400-39106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:39095800-39105200	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links