Variant report

Variant	rs12606961
Chromosome Location	chr18:28066882-28066883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1372944	0.83[ASN][1000 genomes]
rs60323122	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73413774	0.84[ASN][1000 genomes]
rs73413777	0.84[ASN][1000 genomes]
rs8090637	0.83[ASN][1000 genomes]
rs9963126	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057946	chr18:27239754-28146129	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv576600	chr18:27423375-28197518	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	esv34009	chr18:27957966-28115014	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv909512	chr18:28066601-28101661	Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28065000-28068800	Enhancers	HMEC	breast
2	chr18:28065000-28068800	Enhancers	NHEK	skin
3	chr18:28065200-28067200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr18:28065200-28068800	Enhancers	HSMM	muscle
5	chr18:28066200-28067000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr18:28066200-28068200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr18:28066200-28068800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr18:28066400-28067000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr18:28066400-28067200	Enhancers	HSMMtube	muscle
10	chr18:28066400-28068000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr18:28066400-28068000	Enhancers	NH-A	brain
12	chr18:28066400-28068600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr18:28066600-28067400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr18:28066800-28067800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr18:28066800-28073800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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