Variant report

Variant	rs12608402
Chromosome Location	chr18:13369148-13369149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13360238..13362504-chr18:13368546..13370238,2	MCF-7	breast:
2	chr18:13361048..13363977-chr18:13367338..13370416,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12456859	0.81[AFR][1000 genomes]
rs1551367	0.93[EUR][1000 genomes]
rs1893975	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2867877	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2867878	0.94[EUR][1000 genomes]
rs6505810	0.94[EUR][1000 genomes]
rs7230215	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7244756	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13351800-13374800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr18:13354200-13371800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr18:13354200-13372000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr18:13354400-13371200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr18:13355000-13374200	Weak transcription	Dnd41	blood
6	chr18:13356400-13379200	Weak transcription	Aorta	Aorta
7	chr18:13359400-13379400	Weak transcription	Psoas Muscle	Psoas
8	chr18:13361600-13369400	Weak transcription	Pancreas	Pancrea
9	chr18:13362000-13374600	Weak transcription	Fetal Muscle Leg	muscle
10	chr18:13363200-13369800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr18:13363600-13369200	Weak transcription	Fetal Heart	heart
12	chr18:13364200-13371400	Enhancers	Fetal Thymus	thymus
13	chr18:13365200-13369400	Weak transcription	Primary T cells from cord blood	blood
14	chr18:13365200-13372200	Weak transcription	Brain Angular Gyrus	brain
15	chr18:13365600-13369200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr18:13365600-13369200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr18:13365600-13369600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr18:13365800-13370000	Weak transcription	Fetal Brain Male	brain
19	chr18:13365800-13371200	Weak transcription	Fetal Brain Female	brain
20	chr18:13365800-13376400	Weak transcription	Liver	Liver
21	chr18:13366800-13369400	Weak transcription	Gastric	stomach
22	chr18:13366800-13374200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr18:13367200-13372200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr18:13367200-13372200	Weak transcription	Brain Substantia Nigra	brain
25	chr18:13367200-13374600	Weak transcription	Brain Hippocampus Middle	brain
26	chr18:13367600-13369200	Weak transcription	Colonic Mucosa	Colon
27	chr18:13367600-13369400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr18:13367800-13369400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr18:13367800-13371200	Weak transcription	Spleen	Spleen
30	chr18:13367800-13371800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr18:13367800-13372600	Weak transcription	Lung	lung
32	chr18:13367800-13374800	Weak transcription	Right Atrium	heart
33	chr18:13368200-13370000	Enhancers	Thymus	Thymus
34	chr18:13368200-13372000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr18:13368400-13369600	Weak transcription	Brain Germinal Matrix	brain
36	chr18:13368600-13371400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr18:13368800-13370600	Enhancers	Right Ventricle	heart
38	chr18:13368800-13372200	Weak transcription	Brain Anterior Caudate	brain
39	chr18:13369000-13369400	Bivalent Enhancer	Fetal Stomach	stomach
40	chr18:13369000-13369800	Enhancers	Duodenum Mucosa	Duodenum
41	chr18:13369000-13370000	Enhancers	Left Ventricle	heart
42	chr18:13369000-13370200	Enhancers	HepG2	liver
43	chr18:13369000-13370400	Enhancers	Fetal Intestine Small	intestine
44	chr18:13369000-13370400	Enhancers	Stomach Smooth Muscle	stomach
45	chr18:13369000-13370600	Enhancers	Colon Smooth Muscle	Colon
46	chr18:13369000-13370600	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr18:13369000-13373600	Enhancers	Primary T helper cells fromperipheralblood	blood

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