Variant report

Variant rs12610246
Chromosome Location chr19:56886641-56886642
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:56880600-56890600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr19:56880600-56890800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
3 chr19:56880600-56891200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr19:56880600-56891400 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr19:56880800-56888400 Weak transcription Stomach Mucosa stomach
6 chr19:56880800-56890600 ZNF genes & repeats Primary B cells from cord blood blood
7 chr19:56880800-56890800 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
8 chr19:56881000-56890800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr19:56881000-56891000 ZNF genes & repeats Primary hematopoietic stem cells blood
10 chr19:56881200-56892200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr19:56881200-56904000 ZNF genes & repeats Liver Liver
12 chr19:56881400-56887000 Strong transcription HUES6 Cell Line embryonic stem cell
13 chr19:56881400-56887200 Strong transcription HUES64 Cell Line embryonic stem cell
14 chr19:56881400-56890600 Strong transcription iPS-18 Cell Line embryonic stem cell
15 chr19:56881400-56893000 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
16 chr19:56881800-56887000 Strong transcription Cortex derived primary cultured neurospheres brain
17 chr19:56881800-56890800 Strong transcription H1 Cell Line embryonic stem cell
18 chr19:56881800-56890800 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
19 chr19:56882000-56887200 Strong transcription Placenta Placenta
20 chr19:56882000-56887600 ZNF genes & repeats Aorta Aorta
21 chr19:56882000-56887800 Strong transcription H9 Cell Line embryonic stem cell
22 chr19:56882000-56888200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr19:56882000-56890200 ZNF genes & repeats H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr19:56882000-56890600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
25 chr19:56882000-56890800 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr19:56882200-56888000 Strong transcription Fetal Brain Female brain
27 chr19:56882200-56890200 Strong transcription Brain Germinal Matrix brain
28 chr19:56882200-56891200 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr19:56882400-56889800 ZNF genes & repeats Primary T cells from cord blood blood
30 chr19:56882600-56888200 Strong transcription Brain Hippocampus Middle brain
31 chr19:56882800-56887600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr19:56882800-56888200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr19:56883200-56888800 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr19:56883200-56889200 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
35 chr19:56883200-56889200 ZNF genes & repeats A549 lung
36 chr19:56883200-56889400 Strong transcription Fetal Thymus thymus
37 chr19:56883200-56889400 ZNF genes & repeats NHEK skin
38 chr19:56883400-56888400 Strong transcription Left Ventricle heart
39 chr19:56883400-56888400 Strong transcription Rectal Smooth Muscle rectum
40 chr19:56883400-56889200 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
41 chr19:56883400-56889400 ZNF genes & repeats Primary T helper naive cells fromperipheralblood blood
42 chr19:56883400-56889600 ZNF genes & repeats Fetal Lung lung
43 chr19:56883400-56890200 Strong transcription Fetal Brain Male brain
44 chr19:56883400-56890200 ZNF genes & repeats Ovary ovary
45 chr19:56883400-56890400 ZNF genes & repeats Primary neutrophils fromperipheralblood blood
46 chr19:56883400-56890600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr19:56883400-56890800 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
48 chr19:56883400-56891000 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr19:56883400-56891200 ZNF genes & repeats Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr19:56883600-56890000 Strong transcription Brain Anterior Caudate brain

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