Variant report
Variant | rs12610650 |
---|---|
Chromosome Location | chr19:38863185-38863186 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:5 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:38839437..38845026-chr19:38862738..38867726,6 | MCF-7 | breast: | |
2 | chr19:38809437..38811955-chr19:38862671..38865032,2 | K562 | blood: | |
3 | chr19:38818863..38820421-chr19:38862032..38864402,2 | K562 | blood: | |
4 | chr19:38850348..38855103-chr19:38862504..38867180,11 | K562 | blood: | |
5 | chr19:38860843..38863551-chr19:38863957..38866208,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000099338 | Chromatin interaction |
ENSG00000238838 | Chromatin interaction |
ENSG00000099341 | Chromatin interaction |
ENSG00000266963 | Chromatin interaction |
ENSG00000099337 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1077994 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs11556992 | 1.00[CEU][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap] |
rs12608599 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs12608644 | 0.81[ASN][1000 genomes] |
rs12608722 | 0.95[CHB][hapmap];0.82[ASN][1000 genomes] |
rs12609258 | 0.89[AMR][1000 genomes] |
rs12983492 | 0.81[MEX][hapmap] |
rs2074982 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2286474 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs2302186 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2302227 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2891602 | 0.90[TSI][hapmap] |
rs3745954 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs3745958 | 0.91[ASN][1000 genomes] |
rs3745959 | 0.91[ASN][1000 genomes] |
rs3948666 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs45485196 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs55959303 | 0.83[AMR][1000 genomes] |
rs56854837 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs57146784 | 0.97[ASN][1000 genomes] |
rs58462889 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6508790 | 0.81[ASN][1000 genomes] |
rs72480720 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1063471 | chr19:38734744-39148392 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 73 gene(s) | inside rSNPs | diseases |
2 | nsv833822 | chr19:38760748-38945105 | Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 50 gene(s) | inside rSNPs | diseases |
3 | nsv911658 | chr19:38785318-39002140 | Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 55 gene(s) | inside rSNPs | diseases |
4 | nsv470140 | chr19:38840139-39119494 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
5 | nsv911659 | chr19:38852357-39002140 | Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 36 gene(s) | inside rSNPs | diseases |
6 | nsv911660 | chr19:38852357-39060238 | Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
7 | nsv833823 | chr19:38855550-39035800 | Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
8 | nsv1064275 | chr19:38859865-38913251 | Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:38853800-38864400 | Weak transcription | A549 | lung |
2 | chr19:38861200-38865000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
3 | chr19:38861400-38864600 | Weak transcription | Duodenum Mucosa | Duodenum |
4 | chr19:38861600-38864200 | Weak transcription | K562 | blood |