Variant report

Variant	rs12611706
Chromosome Location	chr2:125265404-125265405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11693506	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12621169	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12624008	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13034228	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17011555	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17675373	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17726905	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2420868	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2421082	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35545946	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4848242	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4848937	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56204321	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62172590	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6752953	0.98[ASN][1000 genomes]
rs7566257	0.89[ASN][1000 genomes]
rs905629	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014610	chr2:125124983-125350342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv834355	chr2:125128585-125291043	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834356	chr2:125141494-125315418	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv834357	chr2:125258157-125421507	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125259800-125271400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links