The 2.0 version of rSNPBase

Variant report

Variant rs12613547
Chromosome Location chr2:99276332-99276333
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:99231200-99286200 Weak transcription Stomach Mucosa stomach
2 chr2:99234600-99310600 Weak transcription Small Intestine intestine
3 chr2:99234800-99296400 Weak transcription Esophagus oesophagus
4 chr2:99249800-99318000 Weak transcription Psoas Muscle Psoas
5 chr2:99251400-99277800 Weak transcription Spleen Spleen
6 chr2:99251400-99295600 Weak transcription Fetal Stomach stomach
7 chr2:99251600-99302000 Weak transcription Brain Angular Gyrus brain
8 chr2:99251600-99306600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr2:99253200-99277400 Weak transcription Brain Hippocampus Middle brain
10 chr2:99253200-99293000 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr2:99255600-99306800 Weak transcription Colonic Mucosa Colon
12 chr2:99256400-99296000 Weak transcription Rectal Smooth Muscle rectum
13 chr2:99259000-99281800 Weak transcription Left Ventricle heart
14 chr2:99260000-99288000 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr2:99260600-99290400 Weak transcription Liver Liver
16 chr2:99260600-99290800 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr2:99264600-99299000 Weak transcription Colon Smooth Muscle Colon
18 chr2:99265200-99291800 Weak transcription Placenta Placenta
19 chr2:99265400-99290800 Weak transcription Stomach Smooth Muscle stomach
20 chr2:99265600-99306600 Weak transcription Lung lung
21 chr2:99265800-99303800 Weak transcription Brain Substantia Nigra brain
22 chr2:99266200-99290400 Weak transcription Adipose Nuclei Adipose
23 chr2:99266200-99296200 Weak transcription Brain Cingulate Gyrus brain
24 chr2:99266400-99278000 Weak transcription HUVEC blood vessel
25 chr2:99266400-99304200 Weak transcription Brain Inferior Temporal Lobe brain
26 chr2:99267600-99284200 Weak transcription Fetal Intestine Small intestine
27 chr2:99269600-99277000 Weak transcription Brain Anterior Caudate brain
28 chr2:99270600-99293800 Strong transcription HepG2 liver
29 chr2:99271800-99288800 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr2:99271800-99289400 Weak transcription Primary B cells from peripheral blood blood
31 chr2:99272200-99277000 Weak transcription Primary hematopoietic stem cells short term culture blood
32 chr2:99272200-99289000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr2:99272400-99277000 Weak transcription Primary hematopoietic stem cells blood
34 chr2:99272400-99280200 Strong transcription Dnd41 blood
35 chr2:99272600-99276800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr2:99273600-99294600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr2:99274000-99277200 Weak transcription Fetal Kidney kidney
38 chr2:99274400-99280200 Weak transcription Primary neutrophils fromperipheralblood blood
39 chr2:99275400-99276400 Flanking Active TSS Primary T helper cells fromperipheralblood blood
40 chr2:99275400-99276400 Strong transcription Fetal Intestine Large intestine
41 chr2:99275400-99279600 Strong transcription Monocytes-CD14+_RO01746 blood
42 chr2:99275600-99276400 Strong transcription Rectal Mucosa Donor 31 rectum
43 chr2:99275600-99280800 Weak transcription NHEK skin
44 chr2:99275800-99276400 Strong transcription Primary monocytes fromperipheralblood blood
45 chr2:99275800-99276400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
46 chr2:99275800-99277200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
47 chr2:99275800-99278200 Weak transcription Thymus Thymus
48 chr2:99275800-99278400 Weak transcription Gastric stomach
49 chr2:99275800-99278600 Strong transcription Duodenum Mucosa Duodenum
50 chr2:99275800-99280800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015