Variant report

Variant	rs12613776
Chromosome Location	chr2:77814580-77814581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11679105	0.87[ASN][1000 genomes]
rs11679151	0.87[ASN][1000 genomes]
rs11691785	0.89[ASN][1000 genomes]
rs11692744	0.87[ASN][1000 genomes]
rs12053133	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12464009	0.85[ASN][1000 genomes]
rs12466842	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12472178	0.89[ASN][1000 genomes]
rs12472973	0.86[ASN][1000 genomes]
rs12473095	0.84[ASN][1000 genomes]
rs12474924	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12476288	0.89[ASN][1000 genomes]
rs12612438	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12613847	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12623256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34364216	0.89[ASN][1000 genomes]
rs35784775	0.89[ASN][1000 genomes]
rs4278957	0.87[ASN][1000 genomes]
rs4278958	0.87[ASN][1000 genomes]
rs4280483	0.87[ASN][1000 genomes]
rs4444561	0.82[ASN][1000 genomes]
rs4485592	0.89[ASN][1000 genomes]
rs4571081	0.87[ASN][1000 genomes]
rs4577308	0.87[ASN][1000 genomes]
rs4580407	0.87[ASN][1000 genomes]
rs4585054	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852438	0.87[ASN][1000 genomes]
rs4852439	0.87[ASN][1000 genomes]
rs4853322	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4853323	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4853328	0.89[ASN][1000 genomes]
rs58661963	0.84[ASN][1000 genomes]
rs59786448	0.85[ASN][1000 genomes]
rs60252241	0.85[ASN][1000 genomes]
rs61006856	0.84[ASN][1000 genomes]
rs61331518	0.89[ASN][1000 genomes]
rs62161498	0.87[ASN][1000 genomes]
rs62161514	0.89[ASN][1000 genomes]
rs62161515	0.89[ASN][1000 genomes]
rs62161516	0.89[ASN][1000 genomes]
rs62161517	0.89[ASN][1000 genomes]
rs62161519	0.89[ASN][1000 genomes]
rs62161525	0.89[ASN][1000 genomes]
rs62161527	0.89[ASN][1000 genomes]
rs62161529	0.89[ASN][1000 genomes]
rs62161532	0.87[ASN][1000 genomes]
rs62161533	0.84[ASN][1000 genomes]
rs62161534	0.84[ASN][1000 genomes]
rs62161535	0.84[ASN][1000 genomes]
rs62161536	0.84[ASN][1000 genomes]
rs66525367	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs66608268	0.87[ASN][1000 genomes]
rs6705597	0.89[ASN][1000 genomes]
rs67075291	0.89[ASN][1000 genomes]
rs6726783	0.87[ASN][1000 genomes]
rs6743172	0.89[ASN][1000 genomes]
rs6743185	0.85[ASN][1000 genomes]
rs6743411	0.89[ASN][1000 genomes]
rs6752994	0.89[ASN][1000 genomes]
rs67867986	0.89[ASN][1000 genomes]
rs72813177	0.89[ASN][1000 genomes]
rs72925962	0.87[ASN][1000 genomes]
rs9784079	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518504	chr2:77326832-78172786	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1004938	chr2:77347740-78186543	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv535783	chr2:77347740-78186543	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv529904	chr2:77347741-78186542	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv997329	chr2:77354560-78176285	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv874339	chr2:77683562-77872197	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv458330	chr2:77782840-77848881	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv582258	chr2:77782840-77848881	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv834268	chr2:77786202-77932056	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv582259	chr2:77787896-77857764	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv874341	chr2:77787896-77909563	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	esv2760608	chr2:77790599-77833745	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv874342	chr2:77794962-77833759	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77807400-77816800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:77808200-77820000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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