Variant report
| Variant | rs12616713 |
|---|---|
| Chromosome Location | chr2:125745164-125745165 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
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| Variant related genes | Relation type |
|---|---|
| RNU6-259P | TF binding region |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10167384 | 0.82[AMR][1000 genomes] |
| rs10180012 | 0.82[AMR][1000 genomes] |
| rs10183325 | 0.83[AMR][1000 genomes] |
| rs11123071 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs12616675 | 0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12623135 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12711698 | 0.82[AMR][1000 genomes] |
| rs1417116 | 0.82[AMR][1000 genomes] |
| rs2421352 | 0.83[AMR][1000 genomes] |
| rs2421354 | 0.82[AMR][1000 genomes] |
| rs4459740 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6719204 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6734972 | 0.84[EUR][1000 genomes] |
| rs6742731 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6742858 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6755688 | 0.81[EUR][1000 genomes] |
| rs7574445 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7574539 | 0.82[AMR][1000 genomes] |
| rs7577654 | 0.80[AMR][1000 genomes] |
| rs9308654 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834361 | chr2:125601081-125810992 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv874991 | chr2:125692490-125901811 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv834362 | chr2:125733921-125907451 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
