Variant report

Variant	rs1261677
Chromosome Location	chr6:16828484-16828485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1150643	1.00[EUR][1000 genomes]
rs1240816	1.00[EUR][1000 genomes]
rs1240831	0.96[AFR][1000 genomes]
rs1240834	0.94[AFR][1000 genomes]
rs1776481	0.82[AFR][1000 genomes]
rs2759208	0.82[AFR][1000 genomes]
rs770944	1.00[EUR][1000 genomes]
rs770945	0.85[AFR][1000 genomes]
rs813448	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16825000-16829600	Weak transcription	Liver	Liver
2	chr6:16825400-16832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:16826400-16832600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:16827800-16829200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr6:16828200-16829200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:16828400-16836200	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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