Variant report

Variant	rs12618365
Chromosome Location	chr2:152574644-152574645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12612539	0.85[ASN][1000 genomes]
rs12612655	1.00[ASN][1000 genomes]
rs12619249	0.97[ASN][1000 genomes]
rs12621850	0.90[ASN][1000 genomes]
rs12623646	0.97[ASN][1000 genomes]
rs6730990	0.89[ASN][1000 genomes]
rs7569133	0.89[ASN][1000 genomes]
rs7608502	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1005746	chr2:152361972-153059840	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv535984	chr2:152361972-153059840	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv933357	chr2:152526786-152591138	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152561400-152574800	Strong transcription	Fetal Muscle Leg	muscle
2	chr2:152562200-152582000	Strong transcription	Fetal Muscle Trunk	muscle
3	chr2:152564600-152584000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:152565600-152575400	Weak transcription	Aorta	Aorta
5	chr2:152573200-152575400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
6	chr2:152574400-152575800	Genic enhancers	HSMMtube	muscle
7	chr2:152574600-152575000	Enhancers	Psoas Muscle	Psoas
8	chr2:152574600-152575600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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