Variant report

Variant	rs12618871
Chromosome Location	chr2:179733594-179733595
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10185678	0.89[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs10186056	0.88[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs73973180	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875455	chr2:179732845-179909467	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179695800-179738400	Weak transcription	Fetal Intestine Large	intestine
2	chr2:179702200-179749200	Weak transcription	Thymus	Thymus
3	chr2:179710800-179782800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr2:179713400-179778600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:179717000-179790600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr2:179728200-179753800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:179728800-179739600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:179729200-179749000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:179729400-179733600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:179729400-179734600	Weak transcription	Right Ventricle	heart
11	chr2:179729400-179753600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr2:179729600-179734600	Weak transcription	Left Ventricle	heart
13	chr2:179729600-179739400	Weak transcription	Aorta	Aorta
14	chr2:179729600-179747200	Weak transcription	Adipose Nuclei	Adipose
15	chr2:179729800-179733800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:179730200-179735000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:179730600-179733800	Weak transcription	Brain Substantia Nigra	brain
18	chr2:179730600-179735000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr2:179730600-179735000	Weak transcription	Hela-S3	cervix
20	chr2:179730600-179735000	Weak transcription	HMEC	breast
21	chr2:179730600-179735000	Weak transcription	HSMM	muscle
22	chr2:179730600-179735000	Weak transcription	HUVEC	blood vessel
23	chr2:179730600-179735200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr2:179730600-179735200	Weak transcription	Osteobl	bone
25	chr2:179730600-179739400	Weak transcription	Pancreas	Pancrea
26	chr2:179730600-179739600	Weak transcription	Right Atrium	heart
27	chr2:179730600-179745800	Weak transcription	NHLF	lung
28	chr2:179730600-179749000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr2:179730800-179735000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr2:179730800-179745200	Weak transcription	Primary B cells from cord blood	blood
31	chr2:179730800-179750600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr2:179730800-179756000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr2:179730800-179770800	Weak transcription	Primary B cells from peripheral blood	blood
34	chr2:179731000-179734000	Weak transcription	Fetal Heart	heart
35	chr2:179731000-179734200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:179732000-179745200	Weak transcription	Fetal Muscle Leg	muscle
37	chr2:179733000-179734200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr2:179733000-179734400	Weak transcription	Psoas Muscle	Psoas
39	chr2:179733000-179736000	Enhancers	HSMMtube	muscle
40	chr2:179733200-179735200	Weak transcription	Primary T cells from cord blood	blood
41	chr2:179733200-179736800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr2:179733200-179779200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr2:179733400-179733800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr2:179733400-179736600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links