Variant report

Variant	rs12619411
Chromosome Location	chr2:142806420-142806421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10173643	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10179841	0.95[CEU][hapmap];0.94[CHB][hapmap]
rs10190170	0.83[CEU][hapmap];0.88[CHB][hapmap]
rs10496912	0.95[CEU][hapmap]
rs10496913	0.95[CEU][hapmap];0.94[CHB][hapmap]
rs10803487	0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs10928133	0.88[ASN][1000 genomes]
rs10928134	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs11677754	0.83[ASN][1000 genomes]
rs11688838	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs11691560	0.89[CHB][hapmap]
rs11691595	0.89[CHB][hapmap]
rs11692364	0.86[ASN][1000 genomes]
rs12105566	0.85[ASN][1000 genomes]
rs12105584	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs12470890	0.89[CHB][hapmap]
rs12613064	0.95[CEU][hapmap];0.83[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12613097	0.95[CEU][hapmap];0.83[CHB][hapmap];0.88[EUR][1000 genomes]
rs12618881	0.85[ASN][1000 genomes]
rs12621782	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs12998297	0.85[ASN][1000 genomes]
rs13036224	0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs13429550	0.95[CEU][hapmap]
rs1349219	0.89[CHB][hapmap]
rs1349221	0.89[CHB][hapmap]
rs1375603	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1375606	0.95[CEU][hapmap];0.94[CHB][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1375609	0.89[CHB][hapmap]
rs1375611	0.88[CHB][hapmap]
rs1375616	0.85[ASN][1000 genomes]
rs1449475	0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs1449476	0.89[CHB][hapmap]
rs1449479	0.94[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs1449480	0.94[CEU][hapmap];0.94[CHB][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1449489	0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs1449490	0.83[ASN][1000 genomes]
rs1449494	0.85[ASN][1000 genomes]
rs1449495	0.85[ASN][1000 genomes]
rs1449496	0.85[ASN][1000 genomes]
rs1449498	0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs1449499	0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs1449501	0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs1449503	0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs1449504	0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs16848074	0.95[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs16848107	0.94[CEU][hapmap];0.82[CHB][hapmap]
rs17824487	0.83[ASN][1000 genomes]
rs17826042	0.95[CEU][hapmap]
rs1868542	0.89[CHB][hapmap]
rs1868543	0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs1868544	0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs1900933	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1900934	0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1900936	0.89[CHB][hapmap]
rs2029142	0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs2060592	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2167053	0.89[CHB][hapmap]
rs2197910	0.83[ASN][1000 genomes]
rs2290140	0.88[CHB][hapmap]
rs34392492	0.83[ASN][1000 genomes]
rs4550611	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4662219	0.94[CHB][hapmap];0.90[ASN][1000 genomes]
rs4662370	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs56217570	0.82[EUR][1000 genomes]
rs62157626	0.84[ASN][1000 genomes]
rs62157627	0.84[ASN][1000 genomes]
rs6744928	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs72851467	0.81[EUR][1000 genomes]
rs736602	1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs7558803	0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7581031	0.89[CHB][hapmap]
rs7586417	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7598886	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs7605112	0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs7608258	0.89[CHB][hapmap]
rs7609479	0.94[CEU][hapmap];0.94[CHB][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs970600	0.94[CEU][hapmap]
rs970601	0.94[CEU][hapmap]
rs980178	0.88[EUR][1000 genomes]
rs993935	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs9941495	0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs9941695	0.85[ASN][1000 genomes]
rs9973706	0.95[CEU][hapmap];0.83[CHB][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875253	chr2:142805006-142855291	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142796200-142809800	Weak transcription	Brain Substantia Nigra	brain
2	chr2:142800400-142810200	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links