Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:52843581..52850062-chr20:52850195..52855343,9	MCF-7	breast:
2	chr20:52846960..52850669-chr20:52882090..52885757,4	MCF-7	breast:
3	chr20:52848398..52850983-chr20:52861832..52863422,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11483554	0.83[ASN][1000 genomes]
rs12479602	0.90[ASN][1000 genomes]
rs12624322	0.96[ASN][1000 genomes]
rs12625916	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1418926	0.90[ASN][1000 genomes]
rs1418927	0.90[ASN][1000 genomes]
rs1961795	0.90[ASN][1000 genomes]
rs28717994	0.87[ASN][1000 genomes]
rs6023044	0.91[ASN][1000 genomes]
rs6091836	0.91[ASN][1000 genomes]
rs6097867	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6097868	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62216577	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62216585	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62216586	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62216587	0.80[EUR][1000 genomes]
rs7267971	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7270114	0.90[ASN][1000 genomes]
rs73137408	0.91[ASN][1000 genomes]
rs8118242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52841000-52851000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:52849400-52852800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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