Variant report

Variant	rs12629075
Chromosome Location	chr3:139907103-139907104
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139905931..139907924-chr3:139914336..139916960,2	K562	blood:
2	chr3:139901794..139903880-chr3:139906327..139907878,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11706003	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11713717	0.83[ASN][1000 genomes]
rs35260142	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4305391	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4336075	0.86[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4361242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4683810	0.83[CEU][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs6767999	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7612325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9810392	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9811727	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9815878	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9818249	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9818563	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9818712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9822648	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9823347	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9825100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9856654	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap]
rs9876646	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139901600-139915000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:139902800-139907400	Enhancers	Fetal Muscle Leg	muscle
3	chr3:139903400-139907600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:139903600-139908000	Enhancers	Fetal Heart	heart
5	chr3:139904800-139907200	Enhancers	Brain Substantia Nigra	brain
6	chr3:139905000-139908000	Enhancers	Brain Germinal Matrix	brain
7	chr3:139905200-139908000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:139905800-139907200	Enhancers	Lung	lung
9	chr3:139905800-139907400	Enhancers	Ovary	ovary
10	chr3:139905800-139907400	Enhancers	Pancreas	Pancrea
11	chr3:139905800-139907400	Enhancers	Psoas Muscle	Psoas
12	chr3:139905800-139907400	Enhancers	Right Atrium	heart
13	chr3:139905800-139907600	Enhancers	Left Ventricle	heart
14	chr3:139905800-139907800	Enhancers	Right Ventricle	heart
15	chr3:139906400-139907200	Weak transcription	Aorta	Aorta
16	chr3:139906400-139913000	Weak transcription	HSMMtube	muscle
17	chr3:139907000-139907400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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