Variant report

Variant	rs12629332
Chromosome Location	chr3:43096980-43096981
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1392319	1.00[CHB][hapmap]
rs1403525	1.00[CHB][hapmap]
rs489117	1.00[CHB][hapmap]
rs530842	1.00[CHB][hapmap]
rs534284	1.00[CHB][hapmap]
rs551658	1.00[CHB][hapmap]
rs604393	1.00[CHB][hapmap]
rs651899	1.00[CHB][hapmap]
rs6763762	1.00[CHB][hapmap]
rs6773223	1.00[CHB][hapmap]
rs678310	1.00[CHB][hapmap]
rs6798412	1.00[CHB][hapmap]
rs680967	1.00[CHB][hapmap]
rs681341	1.00[CHB][hapmap]
rs735320	1.00[CHB][hapmap]
rs7641452	1.00[CHB][hapmap]
rs7644923	1.00[CHB][hapmap]
rs9311331	1.00[CHB][hapmap]
rs9815609	1.00[CHB][hapmap]
rs9816391	1.00[CHB][hapmap]
rs9828785	1.00[CHB][hapmap]
rs9840349	1.00[CHB][hapmap]
rs9862469	1.00[CHB][hapmap]
rs9865715	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9870478	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3434426	chr3:43096850-43097030	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43085000-43097600	Weak transcription	Ovary	ovary
2	chr3:43092200-43101000	Weak transcription	Pancreas	Pancrea
3	chr3:43092800-43117800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:43093400-43120200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr3:43094200-43099800	Weak transcription	Adipose Nuclei	Adipose
6	chr3:43094200-43104200	Weak transcription	Gastric	stomach
7	chr3:43094400-43101400	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:43094400-43101800	Weak transcription	Placenta	Placenta
9	chr3:43094400-43114800	Weak transcription	Brain Anterior Caudate	brain
10	chr3:43095000-43101000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:43095000-43114800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:43095600-43098200	Strong transcription	Stomach Smooth Muscle	stomach
13	chr3:43095600-43098400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:43095600-43100000	Weak transcription	Fetal Intestine Small	intestine
15	chr3:43095800-43101000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:43095800-43104400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:43096200-43121200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr3:43096400-43097600	Enhancers	Fetal Muscle Trunk	muscle
19	chr3:43096800-43097000	Genic enhancers	Fetal Stomach	stomach
20	chr3:43096800-43097600	Enhancers	Fetal Muscle Leg	muscle
21	chr3:43096800-43098000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr3:43096800-43100200	Strong transcription	Liver	Liver
23	chr3:43096800-43102600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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