Variant report

Variant	rs12631991
Chromosome Location	chr3:179375086-179375087
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:179372568..179375317-chr3:179384633..179386319,2	MCF-7	breast:
2	chr3:179372266..179374788-chr3:179375015..179377481,3	K562	blood:
3	chr3:179370547..179374160-chr3:179374749..179378130,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000058056	Chromatin interaction

rs_ID	r²[population]
rs2276803	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73883589	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179372200-179376200	Weak transcription	Aorta	Aorta
2	chr3:179372200-179383800	Weak transcription	Esophagus	oesophagus
3	chr3:179372400-179375800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:179372400-179376200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:179372400-179379600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:179372600-179375600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:179372600-179376000	Weak transcription	Brain Substantia Nigra	brain
8	chr3:179372600-179376200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:179372600-179376200	Weak transcription	Fetal Stomach	stomach
10	chr3:179372600-179376200	Weak transcription	Lung	lung
11	chr3:179372600-179376200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:179372600-179376400	Weak transcription	HSMMtube	muscle
13	chr3:179372600-179378200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:179372600-179378600	Weak transcription	NHEK	skin
15	chr3:179372600-179378800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr3:179372600-179379400	Weak transcription	Brain Angular Gyrus	brain
17	chr3:179372600-179380000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:179372600-179380000	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:179372600-179380400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:179372600-179381200	Weak transcription	Pancreas	Pancrea
21	chr3:179372600-179383800	Weak transcription	HSMM	muscle
22	chr3:179372600-179384200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:179372600-179403200	Weak transcription	Primary B cells from cord blood	blood
24	chr3:179372600-179408400	Weak transcription	Fetal Intestine Small	intestine
25	chr3:179372600-179425200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:179372800-179376400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:179373000-179376000	Weak transcription	Left Ventricle	heart
28	chr3:179373000-179376200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:179373000-179376200	Weak transcription	Ovary	ovary
30	chr3:179373000-179379600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr3:179373000-179380200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:179373000-179381000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:179373000-179383400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:179373000-179383800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr3:179373200-179376000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr3:179373200-179376200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr3:179373200-179376200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr3:179373200-179376200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr3:179373200-179376200	Enhancers	Fetal Heart	heart
40	chr3:179373200-179376400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr3:179373200-179378200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr3:179373200-179383600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr3:179373200-179383800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr3:179373200-179383800	Weak transcription	Fetal Brain Male	brain
45	chr3:179373200-179384200	Weak transcription	NHLF	lung
46	chr3:179373400-179376200	Weak transcription	Brain Germinal Matrix	brain
47	chr3:179373800-179375600	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr3:179374000-179376200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr3:179374400-179376000	Weak transcription	Right Atrium	heart
50	chr3:179374400-179376400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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