Variant report

Variant	rs12632463
Chromosome Location	chr3:99281690-99281691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2623370	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99281000-99283200	Enhancers	NHEK	skin
2	chr3:99281000-99284200	Enhancers	HSMM	muscle
3	chr3:99281200-99283000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:99281200-99283000	Enhancers	HMEC	breast
5	chr3:99281200-99283200	Enhancers	HUVEC	blood vessel
6	chr3:99281200-99283400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:99281200-99284800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:99281400-99281800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:99281400-99282800	Enhancers	NH-A	brain
10	chr3:99281400-99284200	Enhancers	NHDF-Ad	bronchial
11	chr3:99281600-99282400	Enhancers	Aorta	Aorta
12	chr3:99281600-99282600	Weak transcription	NHLF	lung
13	chr3:99281600-99283000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:99281600-99283200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:99281600-99283200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:99281600-99285200	Enhancers	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links