Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr3:69587652-69587757	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr3:69587502-69587825	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr3:69587488-69587802	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr3:69587516-69587791	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000240265	TF binding region

rSNPs within LD-proxies of this variant (count:30)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007730	chr3:69355932-69730587	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3426797	chr3:69433086-69777229	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69583000-69590000	Weak transcription	Brain Angular Gyrus	brain
2	chr3:69585200-69589800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:69585400-69588400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:69585400-69590000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:69585400-69590000	Weak transcription	Spleen	Spleen
6	chr3:69585800-69588000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:69585800-69590000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:69585800-69590000	Weak transcription	Right Atrium	heart
9	chr3:69586000-69589200	Enhancers	Brain Substantia Nigra	brain
10	chr3:69586400-69589800	Enhancers	Fetal Brain Male	brain
11	chr3:69586800-69588000	Enhancers	Brain Hippocampus Middle	brain
12	chr3:69587200-69588000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:69587200-69588200	Enhancers	HMEC	breast
14	chr3:69587200-69590000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:69587400-69587800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:69587400-69588000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:69587400-69588200	Enhancers	Fetal Lung	lung
18	chr3:69587400-69589800	Weak transcription	Brain Anterior Caudate	brain
19	chr3:69587600-69587800	Enhancers	Fetal Brain Female	brain
20	chr3:69587600-69587800	Enhancers	NHEK	skin
21	chr3:69587600-69589600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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