Variant report

Variant	rs12633234
Chromosome Location	chr2:191960890-191960891
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10511313	0.88[EUR][1000 genomes]
rs10804505	0.85[EUR][1000 genomes]
rs10804506	0.88[EUR][1000 genomes]
rs10934191	0.85[EUR][1000 genomes]
rs11717778	0.85[EUR][1000 genomes]
rs11718878	0.88[EUR][1000 genomes]
rs11720045	0.89[EUR][1000 genomes]
rs12487198	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12489734	0.84[EUR][1000 genomes]
rs12490586	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12490671	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13063847	0.85[EUR][1000 genomes]
rs13092251	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13323006	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1354055	0.92[EUR][1000 genomes]
rs16860225	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2220397	0.88[EUR][1000 genomes]
rs2399437	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2399442	0.90[EUR][1000 genomes]
rs28782232	0.85[EUR][1000 genomes]
rs34147006	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6763318	0.84[EUR][1000 genomes]
rs6765575	0.85[EUR][1000 genomes]
rs6786513	0.86[EUR][1000 genomes]
rs6795428	0.92[EUR][1000 genomes]
rs6798395	0.88[EUR][1000 genomes]
rs6799171	0.90[EUR][1000 genomes]
rs6805341	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6806976	0.85[EUR][1000 genomes]
rs6807722	0.88[EUR][1000 genomes]
rs7609699	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7621490	0.82[EUR][1000 genomes]
rs7639603	0.88[EUR][1000 genomes]
rs7641119	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9288964	0.88[EUR][1000 genomes]
rs9813901	0.88[EUR][1000 genomes]
rs9815002	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9819621	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9820561	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9823692	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9825873	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9826834	0.85[EUR][1000 genomes]
rs9829184	0.85[EUR][1000 genomes]
rs9838295	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9839592	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9845041	0.93[EUR][1000 genomes]
rs9846377	0.87[EUR][1000 genomes]
rs9852286	0.92[EUR][1000 genomes]
rs9852577	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9853006	0.88[EUR][1000 genomes]
rs9858931	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9863580	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9865066	0.85[EUR][1000 genomes]
rs9868922	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9869058	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9871326	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9877803	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834493	chr2:191811373-191974240	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv998232	chr2:191841497-192020361	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191944000-191973000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:191951200-191977800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr2:191954800-191977000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:191958600-191966800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:191958600-191969400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr2:191958600-191977600	Weak transcription	Primary T cells from cord blood	blood
7	chr2:191959000-191968200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:191959200-191968000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:191959400-191964400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr2:191959400-191965000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:191959400-191969400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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