Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12493855	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2009534	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2173449	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4679870	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4680543	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4680550	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4680551	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4680555	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6441292	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6441293	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6441294	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6807951	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs746101	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7623472	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9290055	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9821064	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9821775	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9842760	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9847023	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9880666	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9881430	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159766400-159770200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:159766400-159772800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:159767600-159770200	Weak transcription	Fetal Heart	heart
4	chr3:159767600-159770200	Weak transcription	Pancreas	Pancrea
5	chr3:159767600-159770200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:159767600-159770600	Weak transcription	Aorta	Aorta
7	chr3:159768000-159770000	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:159768000-159771000	Weak transcription	Gastric	stomach
9	chr3:159768200-159770000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:159768800-159770400	Enhancers	HepG2	liver
11	chr3:159769800-159770000	Enhancers	HMEC	breast
12	chr3:159769800-159771000	Active TSS	Breast Myoepithelial Primary Cells	Breast

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