Variant report

Variant	rs12634645
Chromosome Location	chr3:157047840-157047841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10460862	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12054252	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12381232	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12631252	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12631461	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12632050	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12632148	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12634758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12635230	0.83[AMR][1000 genomes]
rs12637261	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12638914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12639520	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35870771	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs71310491	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73016288	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv275099	chr3:157046192-157049852	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157036800-157053000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:157039800-157051000	Weak transcription	HUVEC	blood vessel
4	chr3:157041000-157065600	Weak transcription	Pancreas	Pancrea
5	chr3:157046600-157048000	Enhancers	NHLF	lung
6	chr3:157046600-157049400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:157047000-157048000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:157047000-157048200	Enhancers	Osteobl	bone
9	chr3:157047000-157048400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:157047200-157049600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:157047400-157050000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:157047600-157048000	Flanking Active TSS	NHDF-Ad	bronchial
13	chr3:157047600-157048200	Enhancers	HSMMtube	muscle
14	chr3:157047600-157049800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:157047800-157048000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:157047800-157049200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:157047800-157051200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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