Variant report
Variant | rs12635021 |
---|---|
Chromosome Location | chr3:120636788-120636789 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10212556 | 0.89[ASN][1000 genomes] |
rs10934533 | 1.00[ASN][1000 genomes] |
rs10934538 | 1.00[ASN][1000 genomes] |
rs11921863 | 0.89[ASN][1000 genomes] |
rs12330178 | 0.89[ASN][1000 genomes] |
rs12492453 | 0.89[ASN][1000 genomes] |
rs12493977 | 1.00[ASN][1000 genomes] |
rs12494552 | 0.89[ASN][1000 genomes] |
rs12496360 | 0.89[ASN][1000 genomes] |
rs12498064 | 1.00[ASN][1000 genomes] |
rs12630151 | 1.00[ASN][1000 genomes] |
rs12632316 | 1.00[ASN][1000 genomes] |
rs12634158 | 0.89[ASN][1000 genomes] |
rs12635124 | 1.00[ASN][1000 genomes] |
rs12637054 | 0.89[ASN][1000 genomes] |
rs13314093 | 0.84[ASN][1000 genomes] |
rs13314307 | 1.00[ASN][1000 genomes] |
rs13316005 | 1.00[ASN][1000 genomes] |
rs13319102 | 1.00[ASN][1000 genomes] |
rs13323408 | 1.00[ASN][1000 genomes] |
rs1403717 | 1.00[ASN][1000 genomes] |
rs1403722 | 0.89[ASN][1000 genomes] |
rs16831962 | 1.00[ASN][1000 genomes] |
rs16831974 | 1.00[ASN][1000 genomes] |
rs16831976 | 1.00[ASN][1000 genomes] |
rs1920549 | 0.89[ASN][1000 genomes] |
rs1960320 | 0.94[ASN][1000 genomes] |
rs2220255 | 1.00[ASN][1000 genomes] |
rs2331514 | 0.89[ASN][1000 genomes] |
rs28751972 | 0.89[ASN][1000 genomes] |
rs2877405 | 0.89[ASN][1000 genomes] |
rs2877406 | 0.89[ASN][1000 genomes] |
rs28797282 | 1.00[ASN][1000 genomes] |
rs28850644 | 0.89[ASN][1000 genomes] |
rs28852138 | 0.89[ASN][1000 genomes] |
rs35147415 | 1.00[ASN][1000 genomes] |
rs4311161 | 1.00[ASN][1000 genomes] |
rs4444652 | 1.00[ASN][1000 genomes] |
rs4544547 | 1.00[ASN][1000 genomes] |
rs4642056 | 0.89[ASN][1000 genomes] |
rs6438597 | 0.95[ASN][1000 genomes] |
rs6438603 | 0.89[ASN][1000 genomes] |
rs6438605 | 0.89[ASN][1000 genomes] |
rs6438606 | 0.89[ASN][1000 genomes] |
rs6780119 | 0.89[ASN][1000 genomes] |
rs6783166 | 0.89[ASN][1000 genomes] |
rs6785751 | 0.89[ASN][1000 genomes] |
rs6798684 | 0.89[ASN][1000 genomes] |
rs6799012 | 0.89[ASN][1000 genomes] |
rs6808418 | 0.89[ASN][1000 genomes] |
rs7613240 | 0.89[ASN][1000 genomes] |
rs7616617 | 0.89[ASN][1000 genomes] |
rs7617881 | 0.94[ASN][1000 genomes] |
rs7624337 | 1.00[ASN][1000 genomes] |
rs7624461 | 1.00[ASN][1000 genomes] |
rs7624738 | 1.00[ASN][1000 genomes] |
rs7625603 | 0.89[ASN][1000 genomes] |
rs7627802 | 0.89[ASN][1000 genomes] |
rs7628419 | 0.89[ASN][1000 genomes] |
rs7637229 | 0.89[ASN][1000 genomes] |
rs7642063 | 0.94[ASN][1000 genomes] |
rs7642185 | 0.83[ASN][1000 genomes] |
rs7646709 | 0.89[ASN][1000 genomes] |
rs7646815 | 1.00[ASN][1000 genomes] |
rs7648074 | 1.00[ASN][1000 genomes] |
rs7652758 | 1.00[ASN][1000 genomes] |
rs9289150 | 1.00[ASN][1000 genomes] |
rs9289151 | 1.00[ASN][1000 genomes] |
rs9809411 | 1.00[ASN][1000 genomes] |
rs9811686 | 1.00[ASN][1000 genomes] |
rs9815281 | 0.89[ASN][1000 genomes] |
rs9817971 | 1.00[ASN][1000 genomes] |
rs9818311 | 1.00[ASN][1000 genomes] |
rs9818910 | 1.00[ASN][1000 genomes] |
rs9819192 | 1.00[ASN][1000 genomes] |
rs9821483 | 1.00[ASN][1000 genomes] |
rs9822141 | 1.00[ASN][1000 genomes] |
rs9823442 | 0.89[ASN][1000 genomes] |
rs9823877 | 0.84[ASN][1000 genomes] |
rs9824369 | 0.81[ASN][1000 genomes] |
rs9824653 | 1.00[ASN][1000 genomes] |
rs9825058 | 0.89[ASN][1000 genomes] |
rs9826042 | 1.00[ASN][1000 genomes] |
rs9826303 | 1.00[ASN][1000 genomes] |
rs9828540 | 0.89[ASN][1000 genomes] |
rs9831352 | 1.00[ASN][1000 genomes] |
rs9831814 | 0.95[ASN][1000 genomes] |
rs9833700 | 0.89[ASN][1000 genomes] |
rs9833950 | 0.89[ASN][1000 genomes] |
rs9834680 | 0.89[ASN][1000 genomes] |
rs9839106 | 0.84[ASN][1000 genomes] |
rs9840595 | 0.89[ASN][1000 genomes] |
rs9841029 | 1.00[ASN][1000 genomes] |
rs9841743 | 0.82[ASN][1000 genomes] |
rs9842097 | 0.89[ASN][1000 genomes] |
rs9842745 | 1.00[ASN][1000 genomes] |
rs9843476 | 1.00[ASN][1000 genomes] |
rs9844059 | 1.00[ASN][1000 genomes] |
rs9844215 | 1.00[ASN][1000 genomes] |
rs9845595 | 1.00[ASN][1000 genomes] |
rs9849187 | 0.89[ASN][1000 genomes] |
rs9855455 | 0.89[ASN][1000 genomes] |
rs9855929 | 1.00[ASN][1000 genomes] |
rs9855953 | 1.00[ASN][1000 genomes] |
rs9857987 | 1.00[ASN][1000 genomes] |
rs9859511 | 0.89[ASN][1000 genomes] |
rs9859729 | 1.00[ASN][1000 genomes] |
rs9861282 | 0.89[ASN][1000 genomes] |
rs9862407 | 1.00[ASN][1000 genomes] |
rs9862685 | 1.00[ASN][1000 genomes] |
rs9863475 | 1.00[ASN][1000 genomes] |
rs9868798 | 1.00[ASN][1000 genomes] |
rs9871852 | 1.00[ASN][1000 genomes] |
rs9873825 | 1.00[ASN][1000 genomes] |
rs9877402 | 0.89[ASN][1000 genomes] |
rs9878416 | 1.00[ASN][1000 genomes] |
rs9879469 | 0.89[ASN][1000 genomes] |
rs9881138 | 1.00[ASN][1000 genomes] |
rs9884037 | 0.89[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1007557 | chr3:119892894-120764353 | Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
2 | nsv536706 | chr3:119892894-120764353 | Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
3 | nsv869548 | chr3:120320731-121076337 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
4 | nsv916869 | chr3:120360281-120973169 | Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
5 | nsv829700 | chr3:120469191-120675763 | Strong transcription Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:120628800-120643800 | Weak transcription | H1 Cell Line | embryonic stem cell |
2 | chr3:120628800-120644000 | Weak transcription | Ovary | ovary |
3 | chr3:120629200-120638000 | Weak transcription | Brain Germinal Matrix | brain |
4 | chr3:120629400-120639200 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
5 | chr3:120635800-120641200 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
6 | chr3:120636400-120637200 | Strong transcription | Pancreatic Islets | Pancreatic Islet |