Variant report

Variant	rs1263507
Chromosome Location	chr17:17373571-17373572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17367351..17374142-chr17:17375377..17382594,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141026	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11652200	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1242490	0.90[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1242491	0.82[EUR][1000 genomes]
rs1242493	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1242498	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1242499	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1242500	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1242501	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1242502	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1242503	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1242505	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1242506	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1242510	0.83[EUR][1000 genomes]
rs1242511	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1242514	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1242515	0.90[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1242517	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1242518	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1263509	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1269402	0.85[MEX][hapmap]
rs12938634	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2232831	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2660836	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2694920	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2694926	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2694927	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28435349	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4479310	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs4646410	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs4924755	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4924868	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4924877	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4924890	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4924891	0.90[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs711352	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7219976	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7220132	0.90[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7220217	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8074074	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs8074191	0.80[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482648	chr17:17315268-17455442	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1065710	chr17:17328111-17391443	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv907729	chr17:17338536-17425279	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv907730	chr17:17358004-17415217	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv907731	chr17:17358004-17504856	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv827909	chr17:17358945-17394331	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17363600-17380000	Weak transcription	Right Atrium	heart
2	chr17:17363800-17380200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:17369800-17374400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr17:17370800-17375400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr17:17371200-17375600	Weak transcription	Brain Anterior Caudate	brain
6	chr17:17371400-17374200	Weak transcription	Brain Substantia Nigra	brain
7	chr17:17371400-17375400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr17:17371600-17375400	Weak transcription	Hela-S3	cervix
9	chr17:17371800-17375400	Weak transcription	Fetal Brain Female	brain
10	chr17:17372000-17374000	Weak transcription	Brain Hippocampus Middle	brain
11	chr17:17372000-17380200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr17:17372600-17373600	Weak transcription	Brain Germinal Matrix	brain
13	chr17:17372800-17377600	Weak transcription	Adipose Nuclei	Adipose
14	chr17:17373000-17373600	Enhancers	Fetal Brain Male	brain
15	chr17:17373400-17374200	Enhancers	Brain Angular Gyrus	brain

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